These results were generated with sample.exp, and transitive closure matrix standard.
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Visualization file Node Attributes file Help with Visualization
Pathways that produce: 1,4-alpha-D-glucosyl (end molecule)
| Pathway Number | molecule that started pathway | pathway | # of steps in pathway | # of genes that meet criteria |
| 35 | sucrose | sucrose to 1,4-alpha-D-glucosyl | 9 | 8 |
Pathways that produce: 2-isopropylmaleate (end molecule)
| Pathway Number | molecule that started pathway | pathway | # of steps in pathway | # of genes that meet criteria |
| 22 | pyruvate | pyruvate to 2-isopropylmaleate | 6 | 4 |
| 23 | pyruvate | pyruvate to 2-isopropylmaleate | 6 | 4 |
Pathways that produce: 3(3-phosphatidyl-)L-glycerol 1-phosphate (end molecule)
| Pathway Number | molecule that started pathway | pathway | # of steps in pathway | # of genes that meet criteria |
| 17 | UTP | UTP to 3(3-phosphatidyl-)L-glycerol 1-phosphate | 3 | 2 |
| 19 | NH3 | NH3 to 3(3-phosphatidyl-)L-glycerol 1-phosphate | 3 | 2 |
Pathways that produce: ADPglucose (end molecule)
| Pathway Number | molecule that started pathway | pathway | # of steps in pathway | # of genes that meet criteria |
| 28 | sucrose | sucrose to ADPglucose | 5 | 4 |
Pathways that produce: CMP (end molecule)
| Pathway Number | molecule that started pathway | pathway | # of steps in pathway | # of genes that meet criteria |
| 16 | UTP | UTP to CMP | 3 | 2 |
| 18 | NH3 | NH3 to CMP | 3 | 2 |
Pathways that produce: D-erythrose 4-phosphate (end molecule)
| Pathway Number | molecule that started pathway | pathway | # of steps in pathway | # of genes that meet criteria |
| 14 | D-glyceraldehyde 3-phosphate | D-glyceraldehyde 3-phosphate to D-erythrose 4-phosphate | 3 | 3 |
Pathways that use: D-glyceraldehyde 3-phosphate (start molecule)
| Pathway Number | molecule that ended pathway | pathway | # of steps in pathway | # of genes that meet criteria |
| 2 | D-xylulose 5-phosphate | D-glyceraldehyde 3-phosphate to D-xylulose 5-phosphate | 2 | 2 |
| 3 | D-xylulose 5-phosphate | D-glyceraldehyde 3-phosphate to D-xylulose 5-phosphate | 2 | 2 |
| 7 | D-xylulose 5-phosphate | D-glyceraldehyde 3-phosphate to D-xylulose 5-phosphate | 4 | 4 |
| 8 | D-xylulose 5-phosphate | D-glyceraldehyde 3-phosphate to D-xylulose 5-phosphate | 4 | 4 |
| 9 | sedoheptulose 7-phosphate | D-glyceraldehyde 3-phosphate to sedoheptulose 7-phosphate | 4 | 4 |
| 12 | ribose 5-phosphate | D-glyceraldehyde 3-phosphate to ribose 5-phosphate | 3 | 3 |
| 13 | D-xylulose 5-phosphate | D-glyceraldehyde 3-phosphate to D-xylulose 5-phosphate | 3 | 3 |
| 14 | D-erythrose 4-phosphate | D-glyceraldehyde 3-phosphate to D-erythrose 4-phosphate | 3 | 3 |
Pathways that produce: D-xylulose 5-phosphate (end molecule)
| Pathway Number | molecule that started pathway | pathway | # of steps in pathway | # of genes that meet criteria |
| 2 | D-glyceraldehyde 3-phosphate | D-glyceraldehyde 3-phosphate to D-xylulose 5-phosphate | 2 | 2 |
| 3 | D-glyceraldehyde 3-phosphate | D-glyceraldehyde 3-phosphate to D-xylulose 5-phosphate | 2 | 2 |
| 7 | D-glyceraldehyde 3-phosphate | D-glyceraldehyde 3-phosphate to D-xylulose 5-phosphate | 4 | 4 |
| 8 | D-glyceraldehyde 3-phosphate | D-glyceraldehyde 3-phosphate to D-xylulose 5-phosphate | 4 | 4 |
| 13 | D-glyceraldehyde 3-phosphate | D-glyceraldehyde 3-phosphate to D-xylulose 5-phosphate | 3 | 3 |
Pathways that use: L-aspartate (start molecule)
| Pathway Number | molecule that ended pathway | pathway | # of steps in pathway | # of genes that meet criteria |
| 27 | L-threonine | L-aspartate to L-threonine | 5 | 4 |
| 30 | L-methionine | L-aspartate to L-methionine | 7 | 5 |
| 31 | L-methionine | L-aspartate to L-methionine | 7 | 5 |
Pathways that produce: L-cysteine (end molecule)
| Pathway Number | molecule that started pathway | pathway | # of steps in pathway | # of genes that meet criteria |
| 6 | external sulfate | external sulfate to L-cysteine | 5 | 4 |
Pathways that use: L-glutamate (start molecule)
| Pathway Number | molecule that ended pathway | pathway | # of steps in pathway | # of genes that meet criteria |
| 24 | L-proline | L-glutamate to L-proline | 3 | 2 |
| 25 | L-glutamate 5-semialdehyde | L-glutamate to L-glutamate 5-semialdehyde | 3 | 2 |
Pathways that produce: L-glutamate 5-semialdehyde (end molecule)
| Pathway Number | molecule that started pathway | pathway | # of steps in pathway | # of genes that meet criteria |
| 25 | L-glutamate | L-glutamate to L-glutamate 5-semialdehyde | 3 | 2 |
Pathways that produce: L-isoleucine (end molecule)
| Pathway Number | molecule that started pathway | pathway | # of steps in pathway | # of genes that meet criteria |
| 29 | L-threonine | L-threonine to L-isoleucine | 5 | 3 |
Pathways that produce: L-leucine (end molecule)
| Pathway Number | molecule that started pathway | pathway | # of steps in pathway | # of genes that meet criteria |
| 33 | pyruvate | pyruvate to L-leucine | 7 | 4 |
| 34 | pyruvate | pyruvate to L-leucine | 7 | 4 |
Pathways that produce: L-methionine (end molecule)
| Pathway Number | molecule that started pathway | pathway | # of steps in pathway | # of genes that meet criteria |
| 30 | L-aspartate | L-aspartate to L-methionine | 7 | 5 |
| 31 | L-aspartate | L-aspartate to L-methionine | 7 | 5 |
Pathways that produce: L-proline (end molecule)
| Pathway Number | molecule that started pathway | pathway | # of steps in pathway | # of genes that meet criteria |
| 24 | L-glutamate | L-glutamate to L-proline | 3 | 2 |
Pathways that produce: L-threonine (end molecule)
| Pathway Number | molecule that started pathway | pathway | # of steps in pathway | # of genes that meet criteria |
| 27 | L-aspartate | L-aspartate to L-threonine | 5 | 4 |
Pathways that use: L-threonine (start molecule)
| Pathway Number | molecule that ended pathway | pathway | # of steps in pathway | # of genes that meet criteria |
| 29 | L-isoleucine | L-threonine to L-isoleucine | 5 | 3 |
Pathways that produce: L-valine (end molecule)
| Pathway Number | molecule that started pathway | pathway | # of steps in pathway | # of genes that meet criteria |
| 10 | pyruvate | pyruvate to L-valine | 4 | 3 |
| 11 | pyruvate | pyruvate to L-valine | 4 | 3 |
Pathways that produce: NH3 (end molecule)
| Pathway Number | molecule that started pathway | pathway | # of steps in pathway | # of genes that meet criteria |
| 4 | external nitrate | external nitrate to NH3 | 3 | 7 |
| 20 | external nitrate | external nitrate to NH3 | 3 | 6 |
Pathways that use: NH3 (start molecule)
| Pathway Number | molecule that ended pathway | pathway | # of steps in pathway | # of genes that meet criteria |
| 18 | CMP | NH3 to CMP | 3 | 2 |
| 19 | 3(3-phosphatidyl-)L-glycerol 1-phosphate | NH3 to 3(3-phosphatidyl-)L-glycerol 1-phosphate | 3 | 2 |
Pathways that produce: PAPS (end molecule)
| Pathway Number | molecule that started pathway | pathway | # of steps in pathway | # of genes that meet criteria |
| 1 | external sulfate | external sulfate to PAPS | 3 | 3 |
Pathways that use: UTP (start molecule)
| Pathway Number | molecule that ended pathway | pathway | # of steps in pathway | # of genes that meet criteria |
| 16 | CMP | UTP to CMP | 3 | 2 |
| 17 | 3(3-phosphatidyl-)L-glycerol 1-phosphate | UTP to 3(3-phosphatidyl-)L-glycerol 1-phosphate | 3 | 2 |
Pathways that produce: beta-D-fructose 1,6-bisphosphate (end molecule)
| Pathway Number | molecule that started pathway | pathway | # of steps in pathway | # of genes that meet criteria |
| 5 | sucrose | sucrose to beta-D-fructose 1,6-bisphosphate | 3 | 5 |
Pathways that use: beta-D-fructose 1,6-bisphosphate (start molecule)
| Pathway Number | molecule that ended pathway | pathway | # of steps in pathway | # of genes that meet criteria |
| 21 | sucrose 6-phosphate | beta-D-fructose 1,6-bisphosphate to sucrose 6-phosphate | 3 | 3 |
Pathways that produce: dUDP (end molecule)
| Pathway Number | molecule that started pathway | pathway | # of steps in pathway | # of genes that meet criteria |
| 32 | sucrose | sucrose to dUDP | 7 | 6 |
Pathways that use: external nitrate (start molecule)
| Pathway Number | molecule that ended pathway | pathway | # of steps in pathway | # of genes that meet criteria |
| 4 | NH3 | external nitrate to NH3 | 3 | 7 |
| 20 | NH3 | external nitrate to NH3 | 3 | 6 |
Pathways that use: external sulfate (start molecule)
| Pathway Number | molecule that ended pathway | pathway | # of steps in pathway | # of genes that meet criteria |
| 1 | PAPS | external sulfate to PAPS | 3 | 3 |
| 6 | L-cysteine | external sulfate to L-cysteine | 5 | 4 |
Pathways that use: hydroxymethylbilane (start molecule)
| Pathway Number | molecule that ended pathway | pathway | # of steps in pathway | # of genes that meet criteria |
| 26 | siroheme | hydroxymethylbilane to siroheme | 3 | 2 |
Pathways that produce: nicotinate D-ribonucleotide (end molecule)
| Pathway Number | molecule that started pathway | pathway | # of steps in pathway | # of genes that meet criteria |
| 15 | ribose 5-phosphate | ribose 5-phosphate to nicotinate D-ribonucleotide | 6 | 6 |
Pathways that use: pyruvate (start molecule)
| Pathway Number | molecule that ended pathway | pathway | # of steps in pathway | # of genes that meet criteria |
| 10 | L-valine | pyruvate to L-valine | 4 | 3 |
| 11 | L-valine | pyruvate to L-valine | 4 | 3 |
| 22 | 2-isopropylmaleate | pyruvate to 2-isopropylmaleate | 6 | 4 |
| 23 | 2-isopropylmaleate | pyruvate to 2-isopropylmaleate | 6 | 4 |
| 33 | L-leucine | pyruvate to L-leucine | 7 | 4 |
| 34 | L-leucine | pyruvate to L-leucine | 7 | 4 |
Pathways that produce: ribose 5-phosphate (end molecule)
| Pathway Number | molecule that started pathway | pathway | # of steps in pathway | # of genes that meet criteria |
| 12 | D-glyceraldehyde 3-phosphate | D-glyceraldehyde 3-phosphate to ribose 5-phosphate | 3 | 3 |
Pathways that use: ribose 5-phosphate (start molecule)
| Pathway Number | molecule that ended pathway | pathway | # of steps in pathway | # of genes that meet criteria |
| 15 | nicotinate D-ribonucleotide | ribose 5-phosphate to nicotinate D-ribonucleotide | 6 | 6 |
Pathways that produce: sedoheptulose 7-phosphate (end molecule)
| Pathway Number | molecule that started pathway | pathway | # of steps in pathway | # of genes that meet criteria |
| 9 | D-glyceraldehyde 3-phosphate | D-glyceraldehyde 3-phosphate to sedoheptulose 7-phosphate | 4 | 4 |
Pathways that produce: siroheme (end molecule)
| Pathway Number | molecule that started pathway | pathway | # of steps in pathway | # of genes that meet criteria |
| 26 | hydroxymethylbilane | hydroxymethylbilane to siroheme | 3 | 2 |
Pathways that use: sucrose (start molecule)
| Pathway Number | molecule that ended pathway | pathway | # of steps in pathway | # of genes that meet criteria |
| 5 | beta-D-fructose 1,6-bisphosphate | sucrose to beta-D-fructose 1,6-bisphosphate | 3 | 5 |
| 28 | ADPglucose | sucrose to ADPglucose | 5 | 4 |
| 32 | dUDP | sucrose to dUDP | 7 | 6 |
| 35 | 1,4-alpha-D-glucosyl | sucrose to 1,4-alpha-D-glucosyl | 9 | 8 |
Pathways that produce: sucrose 6-phosphate (end molecule)
| Pathway Number | molecule that started pathway | pathway | # of steps in pathway | # of genes that meet criteria |
| 21 | beta-D-fructose 1,6-bisphosphate | beta-D-fructose 1,6-bisphosphate to sucrose 6-phosphate | 3 | 3 |
Pathway 1
Path: external sulfate to PAPS
| proteins in path | # of induced genes | # of repressed genes | # of not changed genes | # of genes in genome |
| sulfate-transporting ATPase | 1 | 0 | 7 | 12 |
| sulfate adenylyltransferase | 1 | 0 | 3 | 4 |
| adenosine phosphosulfate kinase | 1 | 1 | 1 | 3 |
Pathway 2
Path: D-glyceraldehyde 3-phosphate to D-xylulose 5-phosphate
| proteins in path | # of induced genes | # of repressed genes | # of not changed genes | # of genes in genome |
| transketolase | 1 | 0 | 1 | 2 |
| transketolase | 1 | 0 | 1 | 2 |
Pathway 3
Path: D-glyceraldehyde 3-phosphate to D-xylulose 5-phosphate
| proteins in path | # of induced genes | # of repressed genes | # of not changed genes | # of genes in genome |
| transaldolase | 1 | 0 | 1 | 2 |
| transketolase | 1 | 0 | 1 | 2 |
Pathway 4
Path: external nitrate to NH3
| proteins in path | # of induced genes | # of repressed genes | # of not changed genes | # of genes in genome |
| nitrate transporter | 4 | 1 | 9 | 16 |
| nitrate reductase [NADH/NADPH] | 2 | 0 | 0 | 2 |
| nitrite reductase [ferredoxin] | 1 | 0 | 0 | 1 |
Pathway 5
Path: sucrose to beta-D-fructose 1,6-bisphosphate
| proteins in path | # of induced genes | # of repressed genes | # of not changed genes | # of genes in genome |
| beta-fructofuranosidase | 1 | 0 | 6 | 8 |
| fructokinase | 2 | 0 | 3 | 6 |
| 6-phosphofructose phosphotransferase | 2 | 0 | 2 | 5 |
Pathway 6
Path: external sulfate to L-cysteine
| proteins in path | # of induced genes | # of repressed genes | # of not changed genes | # of genes in genome |
| sulfate-transporting ATPase | 1 | 0 | 7 | 12 |
| sulfate adenylyltransferase | 1 | 0 | 3 | 4 |
| adenylylsulfate reductase | 1 | 0 | 2 | 3 |
| sulfite reductase | 1 | 0 | 0 | 1 |
| O-acetylserine lyase [thiol] | 0 | 0 | 9 | 9 |
Pathway 7
Path: D-glyceraldehyde 3-phosphate to D-xylulose 5-phosphate
| proteins in path | # of induced genes | # of repressed genes | # of not changed genes | # of genes in genome |
| transaldolase | 1 | 0 | 1 | 2 |
| fructose-bisphosphate aldolase | 2 | 0 | 5 | 8 |
| sedoheptulose-1,7-bisphosphatase | 0 | 0 | 1 | 1 |
| transketolase | 1 | 0 | 1 | 2 |
Pathway 8
Path: D-glyceraldehyde 3-phosphate to D-xylulose 5-phosphate
| proteins in path | # of induced genes | # of repressed genes | # of not changed genes | # of genes in genome |
| transketolase | 1 | 0 | 1 | 2 |
| fructose-bisphosphate aldolase | 2 | 0 | 5 | 8 |
| sedoheptulose-1,7-bisphosphatase | 0 | 0 | 1 | 1 |
| transketolase | 1 | 0 | 1 | 2 |
Pathway 9
Path: D-glyceraldehyde 3-phosphate to sedoheptulose 7-phosphate
| proteins in path | # of induced genes | # of repressed genes | # of not changed genes | # of genes in genome |
| transaldolase | 1 | 0 | 1 | 2 |
| transketolase | 1 | 0 | 1 | 2 |
| fructose-bisphosphate aldolase | 2 | 0 | 5 | 8 |
| sedoheptulose-1,7-bisphosphatase | 0 | 0 | 1 | 1 |
Pathway 10
Path: pyruvate to L-valine
| proteins in path | # of induced genes | # of repressed genes | # of not changed genes | # of genes in genome |
| acetohydroxyacid synthase | 1 | 0 | 2 | 3 |
| acetohydroxyacid synthase | 1 | 0 | 2 | 3 |
| dihydroxyacid dehydratase | 0 | 0 | 1 | 1 |
| branch chained amino acid aminotransferase | 1 | 0 | 6 | 9 |
Pathway 11
Path: pyruvate to L-valine
| proteins in path | # of induced genes | # of repressed genes | # of not changed genes | # of genes in genome |
| acetohydroxyacid synthase | 1 | 0 | 2 | 3 |
| ketoacid reductoisomerase | 1 | 0 | 0 | 1 |
| dihydroxyacid dehydratase | 0 | 0 | 1 | 1 |
| branch chained amino acid aminotransferase | 1 | 0 | 6 | 9 |
Pathway 12
Path: D-glyceraldehyde 3-phosphate to ribose 5-phosphate
| proteins in path | # of induced genes | # of repressed genes | # of not changed genes | # of genes in genome |
| fructose-bisphosphate aldolase | 2 | 0 | 5 | 8 |
| sedoheptulose-1,7-bisphosphatase | 0 | 0 | 1 | 1 |
| transketolase | 1 | 0 | 1 | 2 |
Pathway 13
Path: D-glyceraldehyde 3-phosphate to D-xylulose 5-phosphate
| proteins in path | # of induced genes | # of repressed genes | # of not changed genes | # of genes in genome |
| fructose-bisphosphate aldolase | 2 | 0 | 5 | 8 |
| sedoheptulose-1,7-bisphosphatase | 0 | 0 | 1 | 1 |
| transketolase | 1 | 0 | 1 | 2 |
Pathway 14
Path: D-glyceraldehyde 3-phosphate to D-erythrose 4-phosphate
| proteins in path | # of induced genes | # of repressed genes | # of not changed genes | # of genes in genome |
| fructose-bisphosphate aldolase | 2 | 0 | 5 | 8 |
| sedoheptulose-1,7-bisphosphatase | 0 | 0 | 1 | 1 |
| transaldolase | 1 | 0 | 1 | 2 |
Pathway 15
Path: ribose 5-phosphate to nicotinate D-ribonucleotide
| proteins in path | # of induced genes | # of repressed genes | # of not changed genes | # of genes in genome |
| ribose-phosphate diphosphokinase | 1 | 0 | 1 | 3 |
| hypoxanthine phosphoribosyltransferase | 0 | 0 | 0 | 0 |
| 6-phosphofructose phosphotransferase | 2 | 0 | 2 | 5 |
| fructose-bisphosphate aldolase | 2 | 0 | 5 | 8 |
| quinolate synthase | 1 | 0 | 0 | 1 |
| quinolinate phosphoribosyl transfersase | 0 | 0 | 1 | 1 |
Pathway 16
Path: UTP to CMP
| proteins in path | # of induced genes | # of repressed genes | # of not changed genes | # of genes in genome |
| CTP synthase | 1 | 0 | 2 | 4 |
| phosphatidate cytidylyltransferase | 1 | 0 | 0 | 1 |
| CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | 0 | 0 | 1 | 1 |
Pathway 17
Path: UTP to 3(3-phosphatidyl-)L-glycerol 1-phosphate
| proteins in path | # of induced genes | # of repressed genes | # of not changed genes | # of genes in genome |
| CTP synthase | 1 | 0 | 2 | 4 |
| phosphatidate cytidylyltransferase | 1 | 0 | 0 | 1 |
| CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | 0 | 0 | 1 | 1 |
Pathway 18
Path: NH3 to CMP
| proteins in path | # of induced genes | # of repressed genes | # of not changed genes | # of genes in genome |
| CTP synthase | 1 | 0 | 2 | 4 |
| phosphatidate cytidylyltransferase | 1 | 0 | 0 | 1 |
| CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | 0 | 0 | 1 | 1 |
Pathway 19
Path: NH3 to 3(3-phosphatidyl-)L-glycerol 1-phosphate
| proteins in path | # of induced genes | # of repressed genes | # of not changed genes | # of genes in genome |
| CTP synthase | 1 | 0 | 2 | 4 |
| phosphatidate cytidylyltransferase | 1 | 0 | 0 | 1 |
| CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | 0 | 0 | 1 | 1 |
Pathway 20
Path: external nitrate to NH3
| proteins in path | # of induced genes | # of repressed genes | # of not changed genes | # of genes in genome |
| nitrate transporter | 4 | 1 | 9 | 16 |
| nitrate reductase [NADH/NADPH] | 2 | 0 | 0 | 2 |
| nitrite reductase [NADH/NADPH] | 0 | 0 | 0 | 0 |
Pathway 21
Path: beta-D-fructose 1,6-bisphosphate to sucrose 6-phosphate
| proteins in path | # of induced genes | # of repressed genes | # of not changed genes | # of genes in genome |
| fructose-bisphosphate aldolase | 2 | 0 | 5 | 8 |
| transaldolase | 1 | 0 | 1 | 2 |
| sucrose phosphate synthase | 0 | 0 | 4 | 4 |
Pathway 22
Path: pyruvate to 2-isopropylmaleate
| proteins in path | # of induced genes | # of repressed genes | # of not changed genes | # of genes in genome |
| acetohydroxyacid synthase | 1 | 0 | 2 | 3 |
| acetohydroxyacid synthase | 1 | 0 | 2 | 3 |
| dihydroxyacid dehydratase | 0 | 0 | 1 | 1 |
| isopropylmalate synthase | 0 | 0 | 2 | 3 |
| isoprpylmalate dehydratase | 1 | 0 | 5 | 7 |
| isoprpylmalate dehydratase | 1 | 0 | 5 | 7 |
Pathway 23
Path: pyruvate to 2-isopropylmaleate
| proteins in path | # of induced genes | # of repressed genes | # of not changed genes | # of genes in genome |
| acetohydroxyacid synthase | 1 | 0 | 2 | 3 |
| ketoacid reductoisomerase | 1 | 0 | 0 | 1 |
| dihydroxyacid dehydratase | 0 | 0 | 1 | 1 |
| isopropylmalate synthase | 0 | 0 | 2 | 3 |
| isoprpylmalate dehydratase | 1 | 0 | 5 | 7 |
| isoprpylmalate dehydratase | 1 | 0 | 5 | 7 |
Pathway 24
Path: L-glutamate to L-proline
| proteins in path | # of induced genes | # of repressed genes | # of not changed genes | # of genes in genome |
| glutamate kinase | 1 | 0 | 0 | 2 |
| phosphoglutamate reductase | 1 | 0 | 0 | 2 |
| pyrroline-5-carboxylate reductase | 0 | 0 | 1 | 1 |
Pathway 25
Path: L-glutamate to L-glutamate 5-semialdehyde
| proteins in path | # of induced genes | # of repressed genes | # of not changed genes | # of genes in genome |
| glutamate kinase | 1 | 0 | 0 | 2 |
| phosphoglutamate reductase | 1 | 0 | 0 | 2 |
| nonenzymatic1 | 0 | 0 | 0 | 0 |
Pathway 26
Path: hydroxymethylbilane to siroheme
| proteins in path | # of induced genes | # of repressed genes | # of not changed genes | # of genes in genome |
| uroporphyrinogen-III synthase | 0 | 0 | 0 | 0 |
| uroporphyrin-III C-methyltransferase | 1 | 0 | 0 | 1 |
| siroheme synthase | 1 | 0 | 0 | 1 |
Pathway 27
Path: L-aspartate to L-threonine
| proteins in path | # of induced genes | # of repressed genes | # of not changed genes | # of genes in genome |
| aspartate kinase | 2 | 0 | 3 | 6 |
| aspartate semialdehyde dehydrogenase | 1 | 0 | 2 | 3 |
| homoserine dehydrogenase | 1 | 0 | 1 | 2 |
| homoserine kinase | 0 | 0 | 2 | 2 |
| threonine synthase | 0 | 0 | 2 | 2 |
Pathway 28
Path: sucrose to ADPglucose
| proteins in path | # of induced genes | # of repressed genes | # of not changed genes | # of genes in genome |
| beta-fructofuranosidase | 1 | 0 | 6 | 8 |
| fructokinase | 2 | 0 | 3 | 6 |
| glucose-6-phosphate isomerase | 1 | 0 | 1 | 2 |
| glucose phosphomutase | 0 | 0 | 5 | 5 |
| glucose-1-phosphate adenylyltransferase | 0 | 0 | 6 | 6 |
Pathway 29
Path: L-threonine to L-isoleucine
| proteins in path | # of induced genes | # of repressed genes | # of not changed genes | # of genes in genome |
| threonine dehydratase | 0 | 0 | 2 | 2 |
| acetohydroxyacid synthase | 1 | 0 | 2 | 3 |
| ketoacid reductoisomerase | 1 | 0 | 0 | 1 |
| dihydroxyacid dehydratase | 0 | 0 | 1 | 1 |
| branch chained amino acid aminotransferase | 1 | 0 | 6 | 9 |
Pathway 30
Path: L-aspartate to L-methionine
| proteins in path | # of induced genes | # of repressed genes | # of not changed genes | # of genes in genome |
| aspartate kinase | 2 | 0 | 3 | 6 |
| aspartate semialdehyde dehydrogenase | 1 | 0 | 2 | 3 |
| homoserine dehydrogenase | 1 | 0 | 1 | 2 |
| homoserine kinase | 0 | 0 | 2 | 2 |
| phosphohomoserine dependent cystathionine synthase | 1 | 0 | 2 | 3 |
| cystathionine beta lyase | 0 | 0 | 1 | 1 |
| methionine synthase cobalamine independent | 0 | 0 | 1 | 2 |
Pathway 31
Path: L-aspartate to L-methionine
| proteins in path | # of induced genes | # of repressed genes | # of not changed genes | # of genes in genome |
| aspartate kinase | 2 | 0 | 3 | 6 |
| aspartate semialdehyde dehydrogenase | 1 | 0 | 2 | 3 |
| homoserine dehydrogenase | 1 | 0 | 1 | 2 |
| homoserine kinase | 0 | 0 | 2 | 2 |
| phosphohomoserine dependent cystathionine synthase | 1 | 0 | 2 | 3 |
| cystathionine beta lyase | 0 | 0 | 1 | 1 |
| methionine synthase cobalamine dependent | 0 | 0 | 1 | 1 |
Pathway 32
Path: sucrose to dUDP
| proteins in path | # of induced genes | # of repressed genes | # of not changed genes | # of genes in genome |
| beta-fructofuranosidase | 1 | 0 | 6 | 8 |
| fructokinase | 2 | 0 | 3 | 6 |
| glucose-6-phosphate isomerase | 1 | 0 | 1 | 2 |
| glucose phosphomutase | 0 | 0 | 5 | 5 |
| UTP-glucose-1-phosphate uridylyltransferase | 0 | 0 | 2 | 2 |
| alpha,alpha-trehalose 6-phosphate synthase | 2 | 0 | 6 | 9 |
| ribonucleoside-diphosphate reductase | 0 | 0 | 3 | 3 |
Pathway 33
Path: pyruvate to L-leucine
| proteins in path | # of induced genes | # of repressed genes | # of not changed genes | # of genes in genome |
| acetohydroxyacid synthase | 1 | 0 | 2 | 3 |
| acetohydroxyacid synthase | 1 | 0 | 2 | 3 |
| dihydroxyacid dehydratase | 0 | 0 | 1 | 1 |
| isopropylmalate synthase | 0 | 0 | 2 | 3 |
| isoprpylmalate dehydratase | 1 | 0 | 5 | 7 |
| isopropylmalate dehydrogenase | 0 | 0 | 1 | 2 |
| branch chained amino acid aminotransferase | 1 | 0 | 6 | 9 |
Pathway 34
Path: pyruvate to L-leucine
| proteins in path | # of induced genes | # of repressed genes | # of not changed genes | # of genes in genome |
| acetohydroxyacid synthase | 1 | 0 | 2 | 3 |
| ketoacid reductoisomerase | 1 | 0 | 0 | 1 |
| dihydroxyacid dehydratase | 0 | 0 | 1 | 1 |
| isopropylmalate synthase | 0 | 0 | 2 | 3 |
| isoprpylmalate dehydratase | 1 | 0 | 5 | 7 |
| isopropylmalate dehydrogenase | 0 | 0 | 1 | 2 |
| branch chained amino acid aminotransferase | 1 | 0 | 6 | 9 |
Pathway 35
Path: sucrose to 1,4-alpha-D-glucosyl
| proteins in path | # of induced genes | # of repressed genes | # of not changed genes | # of genes in genome |
| beta-fructofuranosidase | 1 | 0 | 6 | 8 |
| fructokinase | 2 | 0 | 3 | 6 |
| glucose-6-phosphate isomerase | 1 | 0 | 1 | 2 |
| glucose phosphomutase | 0 | 0 | 5 | 5 |
| UTP-glucose-1-phosphate uridylyltransferase | 0 | 0 | 2 | 2 |
| alpha,alpha-trehalose 6-phosphate synthase | 2 | 0 | 6 | 9 |
| trehalose-phosphatase | 2 | 0 | 2 | 6 |
| alpha,alpha-trehalase | 0 | 0 | 1 | 1 |
| 4-alpha-glucanotransferase | 0 | 0 | 2 | 2 |
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