Computational Biology:

G22.3033.003

[ Lecture 0 | Lecture 1 & 2 | Lecture 3 | Lecture 4 | Lecture 5 | Lecture 6 | Lecture 7 | Lecture 8 ]

Lecturer:

Professor B. Mishra

Office Hours: By appt. Office Phone: 212.998.3464 Email Address: mishra@nyu.edu

Day and Time:

Tuesdays, 5:00-6:50pm EST, Room 102, 251 Mercer St.

Credits for Course:

Prerequisites:

Mathematical Maturity, Combinatorics, Statistics and Algorithms Design

Syllabus:

1.Genome Structure & Grammar

2. Mapping

3. Sequencing & Resequencing

4. Transcription Maps:

Gene Finding, Regulatory Sequences

5. Structural Genomics & Proteomics

6. Functional Genomics:

Genetic Networks, Gene Expression Arrays,

Clustering Algorithms, Ideas from Learning Theory

7. Population Genomics:

SNPs, Linkage Analysis

8. Comparative Genomics

9. DNA Computers

Required Text(s):

Bioinformatics: Sequence and Genome Analysis by David Mount, Cold Spring Harbor Laboratory, ISBN 0879696087.
Introduction to Computational Molecular Biology by Setubal & Meidanis, PWS Publishing Company, ISBN 0-534-95262-3.
Principles of Genome Analysis by S.B. Primrose, Blackwell Science, ISBN 0-86542-946-4.

Recommended Text(s):

Genomics: The Science and Technology Behind the Human Genome Project by Charles R. Cantor and Cassandra L. Smith, John Wiley & Sons, ISBN 0471599085.
Analysis of Human Genetic Linkage by Jurg Ott, The Johns Hopkins University Press, ISBN 0-8018-4257-3.

Midterm Date:

No Midterm.

Final Date:

Class Project.

Homework(s):

Class Presentation.

Bud Mishra
September 1 2002